rs32925537 SNP Detail

Summary

• ID
  rs32925537
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:165836073 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTGC AAACCTCTGA GTTTGTGAGC
  M
  GTTTGTTCTT TTAAAACCTT AAATG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45213177	mCV23746318	ABI	CRAMUS_MOUSE	f	SNP	C	C	A
ss148248042	ENSMUSSNP4236462	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		A
ss320609299	CHEV_2_165819653	CHEVERUD	SCREENING_POP	f	SNP				C	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32925537					SNP	C	C	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165836073 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12718	CpG island 12718	431 bp distal
Gm11464	predicted gene 11464	1636 bp upstream
Ncoa3	nuclear receptor coactivator 3	Intron
Rr570095	regulatory region 570095	1647 bp distal
Rr570096	regulatory region 570096	1518 bp distal
Rr570097	regulatory region 570097	28 bp distal
Rr570098	regulatory region 570098	1136 bp distal
Rr570099	regulatory region 570099	627 bp distal
Rr570100	regulatory region 570100	396 bp proximal
Rr570101	regulatory region 570101	1892 bp proximal
Tssr21748	transcription start site region 21748	1534 bp downstream
Tssr21749	transcription start site region 21749	1486 bp downstream
Tssr21750	transcription start site region 21750	1466 bp downstream
Tssr21751	transcription start site region 21751	1427 bp downstream
Tssr27667	transcription start site region 27667	410 bp upstream