rs32919398 SNP Detail

Summary

• ID
  rs32919398
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:43926163 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGGT GCAGCATCAG GAATGCAGGC
  Y
  TCTCAGCCTT CCTGCACTCA CTCTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45712994	mCV22986114	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C
ss146244487	ENSMUSSNP3109056	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		C
ss321099370	CHEV_4_43939035	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32919398					SNP	T	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:43926163 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Reck	reversion-inducing-cysteine-rich protein with kazal motifs			Intron
				Noncoding-Transcript-Variant
Rr591105	regulatory region 591105			within coordinates
Rr591106	regulatory region 591106			154 bp distal
Rr591107	regulatory region 591107			1771 bp proximal
Rr591108	regulatory region 591108			1845 bp proximal