rs32917452 SNP Detail

Summary

• ID
  rs32917452
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135000588 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCGCGGCG CAGCTGCTGC
  TGGTTGGGTG CCAAGTGACC TCATGCGGCG GCCCGCCTCG CGCCCTCTCC CCCGCTGCAG
  CCGCAGGGAC TCATCGTCCC CTCCGGTTCC CGGGGCGGCG GCCTCCTCGG CTACTTCTGT
  TAGGCGCGGC CGCCTTTTCC TGGAAAACTT TTGCGAAAGT TTTCATGTCC TTAAGAACTT
  K
  TTAATCCTTC TGACCGCGGA TCTCCTTTCG TGATCCTTCT CTATTTGAAA TCAAGATACT
  CAAAAGTTCT TGTAAAGTCG TCCTGTGTCC CGGGCTCTGA ATTAGGCCAA AACGGTGGGA
  CAGCGTCCCG CTCCAGCACA ACCCCAGTGC TTGAGGCAGC GCCTGACTCT GAAAACGTTA
  TCCGTGCTGT TTTGCCCCAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45712078	mCV25366088	ABI	CRAMUS_MOUSE	f	SNP	T	G	T	T
ss147543301	ENSMUSSNP3454592	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32917452					SNP	T	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135000588 () rs orientation: forward

Symbol	Name	Function Class
Clic4	chloride intracellular channel 4	517 bp upstream
Cpgi15068	CpG island 15068	within coordinates
Rr398589	regulatory region 398589	86 bp downstream
Rr601975	regulatory region 601975	474 bp distal
Rr601976	regulatory region 601976	1599 bp distal
Rr601977	regulatory region 601977	1553 bp distal
Rr601978	regulatory region 601978	807 bp distal
Rr601979	regulatory region 601979	464 bp distal
Rr601980	regulatory region 601980	within coordinates
Rr601981	regulatory region 601981	148 bp distal
Rr601982	regulatory region 601982	1267 bp proximal
Tssr39607	transcription start site region 39607	1095 bp downstream
Tssr43973	transcription start site region 43973	560 bp upstream
Tssr43974	transcription start site region 43974	530 bp upstream
Tssr43975	transcription start site region 43975	504 bp upstream
Tssr43976	transcription start site region 43976	485 bp upstream
Tssr43977	transcription start site region 43977	458 bp upstream