rs32917173 SNP Detail

Summary

• ID
  rs32917173
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:88848215 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCTCGTAG ACACCAAGCC
  AATATTCCTT CTTGCCCCAA TATTGGCTTT TATTTCTTTT GTTAACATTT TGTTTTGCTT
  TGACTCGCTG AAATGCACAG AGGCCTTTTA TAAATCTCAG CGTAGGGGTA AAAGGAAAAG
  GAAAGAGCAG GCCCCTCCCC CAATCCCACA CTGGACAGGG GATGCTCCGC GCCTAAGAAC
  Y
  CTTCTTGGAA TCCTAGGATC CGTTGCAAGC GGCCCTTTCT TCTTCAGTTC TTACCCTCCA
  GACTTAGGCC TGTAGGATTT CCTGTTCTCA GCAAACCCAG GCCTGGTGAT TGTCATAGGT
  GCTGCCTTCC TACCACGCAG TCAGAGTGGT CATTTTCTCC TGACCTTGGA ACTGCGTGCC
  TCTGGAGAAC ATGGCCACCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46746863	NES10749957	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32917173					SNP	C	C	C	C	C	T	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46746863	NES10749957	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:88848215 () rs orientation: forward

Symbol	Name	Function Class
Dap3	death associated protein 3	Intron
Rr579925	regulatory region 579925	1654 bp distal
Rr579926	regulatory region 579926	712 bp distal
Rr579927	regulatory region 579927	1020 bp distal
Rr579928	regulatory region 579928	916 bp distal