rs32914646 SNP Detail

Summary

• ID
  rs32914646
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137393769 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGAATGGAAA AGGTCTTCCC GTTGGCTTTT ATGTCCCCTA
  CCCAGGCTTC TTGCCAGCTC ATTACTTCAT TTGAGAAAGA AAAAAAAAAA AAAAAGCCTA
  Y
  CCTCCCCTTC TCCCCAAGAT AGTTGCCTGG CATGCTCTCA GGAGCCCTCT TTGCCTTGCT
  AACCATTATC CAGCGCAGTT GACAGAAGGG TCCTTTCTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45711844	mCV24784335	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T	C
ss147615565	ENSMUSSNP4530212	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C		C
ss321366190	CHEV_4_137222373	CHEVERUD	SCREENING_POP	f	SNP						T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32914646					SNP	T	T	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137393769 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm54263	predicted gene, 54263			1652 bp upstream
Rap1gap	Rap1 GTPase-activating protein			Intron
				Noncoding-Transcript-Variant
Rr602670	regulatory region 602670			870 bp distal
Rr602671	regulatory region 602671			1102 bp proximal
Rr602672	regulatory region 602672			1978 bp proximal
Tssr39770	transcription start site region 39770			1671 bp downstream
Tssr44130	transcription start site region 44130			99 bp upstream