rs32913003 SNP Detail

Summary

• ID
  rs32913003
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:88740791 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCTCTTTC TCGGAACCTG
  GCTTTTCTCC GCAGTTGGAG ATTCCTTTGT CTCTGCTAAT GGCCTGTCGC CTTTCTTTTC
  CTTTGTAGGG TTTGGGTTTT GATTCCAAGA TCAGGCCAGC TGTGACCAAA AGAGCGCTTT
  TGGTTTCTTA ATGTGACCCC CCCCCCTCCC CAATGACAGA GAAGAGAAGT TGTGATTTTT
  Y
  AAAAAGACAG TCTCTCTCAA CCAGGCTGCT CTGCAACTCA TTTGTTTAGC CAGCCTATAC
  TGGACTGGAA ATCTCCTATT GATAGGATTA CAATCTCCTA TTGAGCCACC ACAGCCTGTC
  AAGAGTAATT TTAATTACAT TTATTGACAG GGTCTTGGGT AATACAGACT GACCTTGAAC
  TTACTGTGTA GTCCAGGCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss46745819	NES10754936	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	T	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs32913003					SNP	T	C	C	T	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46745819	NES10754936	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:88740791 () rs orientation: forward

Symbol	Name	Function Class
1500004A13Rik	RIKEN cDNA 1500004A13 gene	937 bp upstream
Gm64348	predicted gene, 64348	within coordinates
Gon4l	gon-4 like	1740 bp upstream
Rr375322	regulatory region 375322	1392 bp downstream
Rr375323	regulatory region 375323	1470 bp upstream
Rr397779	regulatory region 397779	680 bp downstream
Rr579902	regulatory region 579902	1009 bp distal
Rr579903	regulatory region 579903	1890 bp distal
Rr579904	regulatory region 579904	345 bp distal
Rr579905	regulatory region 579905	1092 bp proximal
Rr579906	regulatory region 579906	1231 bp proximal
Rr579907	regulatory region 579907	1657 bp proximal
Rr579908	regulatory region 579908	1673 bp proximal
Rr579909	regulatory region 579909	1758 bp proximal
Tssr34067	transcription start site region 34067	913 bp upstream