rs32909562 SNP Detail

Summary

• ID
  rs32909562
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:88739342 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGTGGGGGG GGGTTGTTCA CATCCTCTGC AAGCTTGCCA
  TTTCTCACCT CCAGACGTGC TGACAGTGCA CCATCAAGGG TTTACCATCA AGGTTTTAGC
  R
  TCCTGGACCT GCCTATCCTC GGTGGCACTC TGCCCTTGCC AGAGCCTGCA TCCCACAGCT
  GAAATTCAGA GGTTCTCCAC AGCCTTCTAC TCATGACCTC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46745765	NES10754904	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	G	G	A	A	G	A	G	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32909562					SNP	G	G	G	A	G	G	A	A	G	A	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46745765	NES10754904	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:88739342 () rs orientation: forward

Symbol	Name	Function Class
1500004A13Rik	RIKEN cDNA 1500004A13 gene	within coordinates
Gm64348	predicted gene, 64348	within coordinates
Rr375322	regulatory region 375322	within coordinates
Rr397779	regulatory region 397779	469 bp upstream
Rr579901	regulatory region 579901	588 bp distal
Rr579902	regulatory region 579902	within coordinates
Rr579903	regulatory region 579903	441 bp distal
Rr579904	regulatory region 579904	441 bp proximal
Tssr34067	transcription start site region 34067	511 bp downstream