rs32906984 SNP Detail

Summary

• ID
  rs32906984
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:88740837 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTCTCTGC TAATGGCCTG
  TCGCCTTTCT TTTCCTTTGT AGGGTTTGGG TTTTGATTCC AAGATCAGGC CAGCTGTGAC
  CAAAAGAGCG CTTTTGGTTT CTTAATGTGA CCCCCCCCCC TCCCCAATGA CAGAGAAGAG
  AAGTTGTGAT TTTTCAAAAA GACAGTCTCT CTCAACCAGG CTGCTCTGCA ACTCATTTGT
  K
  TAGCCAGCCT ATACTGGACT GGAAATCTCC TATTGATAGG ATTACAATCT CCTATTGAGC
  CACCACAGCC TGTCAAGAGT AATTTTAATT ACATTTATTG ACAGGGTCTT GGGTAATACA
  GACTGACCTT GAACTTACTG TGTAGTCCAG GCTGGTCTTG AACTCCTTTC AACACCTGCC
  AAATGCTAGT GTTACAGTCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46745822	NES10754937	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	G	T	G	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32906984					SNP	T	T	T	T	T	T	G	G	T	G	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46745822	NES10754937	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:88740837 () rs orientation: forward

Symbol	Name	Function Class
1500004A13Rik	RIKEN cDNA 1500004A13 gene	983 bp upstream
Gm64348	predicted gene, 64348	41 bp downstream
Gon4l	gon-4 like	1694 bp upstream
Rr375322	regulatory region 375322	1438 bp downstream
Rr375323	regulatory region 375323	1424 bp upstream
Rr397779	regulatory region 397779	726 bp downstream
Rr579902	regulatory region 579902	1055 bp distal
Rr579903	regulatory region 579903	1936 bp distal
Rr579904	regulatory region 579904	391 bp distal
Rr579905	regulatory region 579905	1046 bp proximal
Rr579906	regulatory region 579906	1185 bp proximal
Rr579907	regulatory region 579907	1611 bp proximal
Rr579908	regulatory region 579908	1627 bp proximal
Rr579909	regulatory region 579909	1712 bp proximal
Tssr34067	transcription start site region 34067	959 bp upstream