rs32905283 SNP Detail

Summary

• ID
  rs32905283
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:97296874 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGGA ACGCTTTGGG GAGTCAGGAC
  M
  CTAAGTAACA GGACCTGGCA TTGGT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45210543	mCV23693173	ABI	CRAMUS_MOUSE	f	SNP	A	C	C	A
ss146995021	ENSMUSSNP3847491	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C		A
ss320413813	CHEV_2_97306686	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32905283					SNP	A	C	C	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:97296874 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11965	CpG island 11965			38 bp proximal
Gm54117	predicted gene, 54117			within coordinates
Gm75348	predicted gene, 75348			within coordinates
Lrrc4c	leucine rich repeat containing 4C			Intron
				mRNA-UTR
Rr561447	regulatory region 561447			50 bp distal
Rr561448	regulatory region 561448			638 bp proximal
Rr561449	regulatory region 561449			1139 bp proximal
Rr561450	regulatory region 561450			1655 bp proximal
Tssr19016	transcription start site region 19016			44 bp downstream
Tssr19017	transcription start site region 19017			947 bp upstream
Tssr19018	transcription start site region 19018			1010 bp upstream
Tssr19019	transcription start site region 19019			1046 bp upstream
Tssr19020	transcription start site region 19020			1157 bp upstream