rs32900016 SNP Detail

Summary

• ID
  rs32900016
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121279961 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTTT TCCTCTCTCC CTTTTCTTTC
  Y
  GCTCTCGCTC CCCGCGCGCC CGGGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45210027	mCV22586337	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss147386371	ENSMUSSNP2698410	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss320483212	CHEV_2_121275216	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32900016					SNP	C	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121279961 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm22953	predicted gene, 22953			1190 bp downstream
Gm75262	predicted gene, 75262			within coordinates
Rr397250	regulatory region 397250			64 bp downstream
Rr563824	regulatory region 563824			1186 bp distal
Rr563825	regulatory region 563825			1083 bp distal
Rr563826	regulatory region 563826			87 bp distal
Rr563827	regulatory region 563827			716 bp proximal
Serf2	small EDRK-rich factor 2			Intron
				Noncoding-Transcript-Variant
Serinc4	serine incorporator 4			Intron
Tssr19771	transcription start site region 19771			87 bp downstream
Tssr19772	transcription start site region 19772			826 bp upstream
Tssr25936	transcription start site region 25936			715 bp downstream