rs32898500 SNP Detail

Summary

• ID
  rs32898500
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:186140337 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATCC CTCTGCTCGT CAGTCCCTTG
  W
  GACTGTGGGC CTGTGGTTTA AAGCC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46745038	NES10638377	PERLEGEN	MM_PANEL2	f	SNP	A		T	A	A	A	A	A	T	A	T	A	A	T
ss146455045	ENSMUSSNP4606978	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32898500					SNP	A	A	T	A	A	A	A	A	T	A	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46745038	NES10638377	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:186140337 () rs orientation: forward

Symbol	Name	Function Class
Gm35341	predicted gene, 35341	within coordinates
Rr425482	regulatory region 425482	324 bp distal
Rr425483	regulatory region 425483	121 bp distal
Rr425484	regulatory region 425484	824 bp proximal