rs32897164 SNP Detail

Summary

• ID
  rs32897164
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:119691872 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTGGAGCC CTGGGAGGAT
  ACATAATTGA TGCAAAGGCT GCTGAACTAG GCAGCTCTCA GGTAGAACCT GAACCTAGCA
  TCCTGCTGAT GTGTAGCCAG CTTTCCCAAA CTTGGCACCT GTGGCATTCT GAGCCACACA
  GCGCCTTCAT GTGGACTGCT GTCCCATTCA TTGGGTCAGA ATGCAGAACA GTGAGGCTGG
  Y
  TTCTGATTAC TGGGTGCCCA TGTCCAGTAG TGACAACCAC AGATGTTTCT ACGCATTGCC
  AAATGTCTCT GGGGTAGGAA AGATGCTCCT ATTTGAATGC CGCTGTGTAG GGGGCTCAAT
  GCTGCTGAGG ACTTGCCAAC AATTTCTGTC TGAGTTTAAG AGCCAGAGAA TCAGGATGTC
  TGCTGTGAGA TAGAGTCTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45710186	mCV25416265	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32897164					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:119691872 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Hivep3	human immunodeficiency virus type I enhancer binding protein 3			Intron
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Rr377081	regulatory region 377081			within coordinates
Rr598660	regulatory region 598660			42 bp distal