rs32895553 SNP Detail

Summary

• ID
  rs32895553
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:70296400 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCAGATTCGA CACTGTCAAG AAGGACCAAG GGGATTCCAT
  GACATGGGGA CAGGAATGTC GAAATTACTG AAAAACGTGA AAAATGAGAA ATGCACACTG
  Y
  AGGACCTGGA ATATGGCGAG AAAACTGAAC ATCACGGAAA ATGAGAATAA CACTCTTTAG
  GTAGTGAAAT ATGACGAGAA ATATTGAAAA ATAAGCACT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45709182	mCV24453516	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss146495408	ENSMUSSNP6808774	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs32895553					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:70296400 () rs orientation: forward

Symbol	Name	Function Class
Cdk5rap2	CDK5 regulatory subunit associated protein 2	Intron
Rr593865	regulatory region 593865	511 bp distal
Rr593866	regulatory region 593866	608 bp distal
Tssr37622	transcription start site region 37622	36 bp downstream
Tssr37623	transcription start site region 37623	4 bp downstream
Tssr37624	transcription start site region 37624	12 bp upstream
Tssr37625	transcription start site region 37625	56 bp upstream
Tssr42116	transcription start site region 42116	12 bp downstream
Tssr42117	transcription start site region 42117	44 bp downstream
Tssr42118	transcription start site region 42118	56 bp downstream