rs32892096 SNP Detail

Summary

• ID
  rs32892096
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:93283440 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAAG CCAAGCTATG GCAAGCCTCG
  K
  CTCAGCCTCA GGAAGCAGGG GTCCA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45208887	mCV23857802	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	G
ss146943786	ENSMUSSNP1777005	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		G
ss320395934	CHEV_2_93293252	CHEVERUD	SCREENING_POP	f	SNP					T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32892096					SNP	T	T	T	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93283440 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cd82	CD82 antigen			Intron
				Noncoding-Transcript-Variant
Gm10804	predicted gene 10804			within coordinates
Rr561200	regulatory region 561200			427 bp distal
Rr561201	regulatory region 561201			264 bp distal
Rr561202	regulatory region 561202			within coordinates
Rr561203	regulatory region 561203			1868 bp proximal
Rr561204	regulatory region 561204			1902 bp proximal
Tssr18992	transcription start site region 18992			262 bp downstream
Tssr18993	transcription start site region 18993			334 bp upstream
Tssr18994	transcription start site region 18994			374 bp upstream
Tssr18995	transcription start site region 18995			1568 bp upstream
Tssr25289	transcription start site region 25289			408 bp upstream
Tssr25290	transcription start site region 25290			50 bp downstream