rs32889387 SNP Detail

Summary

• ID
  rs32889387
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164247880 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAGAGCAT GCCATCATCC
  TAAGAGAAGG TGTGCGCACA TGCCTGCAGC AAAGATGTGA GCAGACTGTG TGGATCCTGC
  ATGCCAAGGT GGCTCAGAAA TCCTATGGAA ATGAGAAGCG GTAGGTGGCT CCCTACCCCG
  ACCCAGGTCT CCACAGCCTT CAGCCCTATG CCTCCCTCCA AACCCACCAC CATTTAGCTT
  S
  TTTGACATCT TGGAGGCCTC AAGGCTGACA CCTCAGCCAT TGTTCAGCCA GGGTCCTGTT
  CCCCAGCCAA CAACAGCTGC CTACTGGGAT CTAGAGCAGA ACTTGACAGT GGCTGTCAGA
  TCCCCACATC CCCGACCAGT ATCCATTCAT TCTGCTGCGT ACTACATGTC ACGCACCAGG
  GTCACTGCTG GGCACTAAGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45208251	mCV23181603	ABI	CRAMUS_MOUSE	f	SNP	G	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs32889387					SNP	G	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164247880 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12657	CpG island 12657			962 bp distal
Cpgi12658	CpG island 12658			1882 bp proximal
Matn4	matrilin 4			800 bp upstream
Rbpjl	recombination signal binding protein for immunoglobulin kappa J region-like			Intron
				Noncoding-Transcript-Variant
Rr569598	regulatory region 569598			1359 bp distal
Rr569599	regulatory region 569599			856 bp distal
Rr569600	regulatory region 569600			567 bp distal
Rr569601	regulatory region 569601			1716 bp proximal
Rr569602	regulatory region 569602			1938 bp proximal
Tssr21579	transcription start site region 21579			1560 bp downstream
Tssr21580	transcription start site region 21580			663 bp downstream
Tssr27451	transcription start site region 27451			1339 bp upstream
Tssr27452	transcription start site region 27452			1136 bp upstream
Tssr27453	transcription start site region 27453			1103 bp upstream