rs32888748 SNP Detail

Summary

• ID
  rs32888748
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:185994738 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTAGTGGTT TACACAGAAA
  GAGAAAAGCA ACCAAGACAG AAACAATTCA ATTTGTGAGT CATCTGACTA GCCAGTTGGC
  TTCTTTTATC CCAAAGGGTC AGGTCCACAG AGTCACAGAT GTGCAGGAAA CCTTGGACTT
  GCTGTGAGCA TCCCTCAAAA TTTTTTTTAT CACACTCTCA CATTACATGC CTGCTCTACT
  K
  CTGTGCAACA ACATATTATG TGAACATCAT ATAAACTACT TACTTGTATG TGAAATATAT
  ATACATATAT ACATATATAT ATATATATAT ATACACACAC ATATGTAGTG TCTGAAGTAG
  AAAAGAAAAG AAAGCAACTT TCAAAACTAT ATGCTAATTA TGACAAAACA TTTAACCTCA
  CAATTCTCTG GTATGTTTGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46743163	NES10644171	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32888748					SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46743163	NES10644171	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185994738 () rs orientation: forward

Symbol	Name	Function Class
Rr372597	regulatory region 372597	336 bp downstream
Rr425468	regulatory region 425468	558 bp distal
Rr425469	regulatory region 425469	1446 bp proximal
Rr425470	regulatory region 425470	2000 bp proximal