rs32879005 SNP Detail

Summary

• ID
  rs32879005
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:118978595 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CCTCCTTTAC ACTGGGCATC TTACGTGTGT TTATGACGTT GGTGGTGAGT TCTATTTTAC
  AGACTCAGGC TGATGAAATG ACCTGTGGGT AAGGTCATGT ACTGGTGAAT GGTGGCATCT
  CAGCCAAGCT CTTTGTTTCC ATAGCCTCAG GCTGCCTTCC TTTCCTGACC CACTCTCTTG
  TCCTTTAACA ATTCCCACTT TCACAGGGCT CATGGAGTAG AGGTAGTCAG CCCTCCTGTC
  AGACATGCTC ACTACCCAGG CTGAGGAGGC TAGACAGTGA GTGTGAGAGT GCCTCTCTCG
  K
  GACCAGGGCA CCAGACTAGA ATCAGAGCTG GGCTTCTTCC AAGTAGGCGG AGCTTGGCTG
  TAGGGGCCAC GCCCGATGCT GGGGAGCAAG TCCCTAGGAA GGCTTGGCTG CTGAGTCATG
  CTGAGCTGCA GCAGCCCTGA TGGGATTTTT CCAGGATCTA ACATGGCAAC TGTGAGCCCA
  TGCTTGGAAC AAATCCCAAA CCTTGTTTTT ACTAAGTGCT TAGACAGCTC CCACCTAAGT
  GTGTCCTTTG CAGCCAGCTG TTTTGGGGGA ATCTGCAGAT GTAAAGTCTA TACAACAAGA
                                                                   
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45707187	mCV22645981	ABI	CRAMUS_MOUSE	f	SNP	G	G	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32879005					SNP	G	G	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:118978595 () rs orientation: forward

Symbol	Name	Function Class
Rr377076	regulatory region 377076	within coordinates
Rr598496	regulatory region 598496	1490 bp distal
Rr598497	regulatory region 598497	within coordinates
Rr598498	regulatory region 598498	1991 bp proximal
Slc2a1	solute carrier family 2 (facilitated glucose transporter), member 1	Intron
Tssr38701	transcription start site region 38701	939 bp downstream