rs32878860 SNP Detail

Summary

• ID
  rs32878860
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:185871512 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAAGGTCT CTTAGCCATT
  CACCTGAAGG CCTCCTTATA CATATCAAAC ATTCCATCAT ATCTCAGTAA CATCACCACG
  AGGACTAAGT CTGTGGCAGA TGGAACTCTG GGAGACAGAT AAGACCCTGA TGTATGGGAG
  AAAAACAAGC GAATGGGTCA TAGTCCTTCC TATTCCAAGA GGATGAAGAA AAGCAGTTGT
  Y
  AGCCTTGGGC CTGGCTGTCC TTCTAGTCCA AGCTTAAGAA AGGGACTGTC CTATTGCTCC
  AGAAGTCTCA TAAACTTGAC TCCAGGCCCA GCAAGATGAC ACCGTATAGA GTCACTCTCG
  TTCTGTTTTG GTAATGCTCG CATAACCTAA TCCAGCATTT AGATGTATAA GAAATTTCCA
  GTTCTGACAC TCCAGTCACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46741000	NES10649900	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32878860					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46741000	NES10649900	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185871512 () rs orientation: forward

Symbol	Name	Function Class
Rr425453	regulatory region 425453	1979 bp distal
Rr425454	regulatory region 425454	950 bp distal
Tssr10623	transcription start site region 10623	1344 bp downstream