rs32878856 SNP Detail

Summary

• ID
  rs32878856
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:185871406 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATGATGGA GCATGGTCCC
  TCATCTCATT GCCAGAAAGC AAAACAAGCA AAGCATAACA AAAGATAAAA TAGGAAATGG
  AGGATACTGA GTTCCTATTG TCCTCTCCCA AGGTCTCTTA GCCATTCACC TGAAGGCCTC
  CTTATACATA TCAAACATTC CATCATATCT CAGTAACATC ACCACGAGGA CTAAGTCTGT
  R
  GCAGATGGAA CTCTGGGAGA CAGATAAGAC CCTGATGTAT GGGAGAAAAA CAAGCGAATG
  GGTCATAGTC CTTCCTATTC CAAGAGGATG AAGAAAAGCA GTTGTCAGCC TTGGGCCTGG
  CTGTCCTTCT AGTCCAAGCT TAAGAAAGGG ACTGTCCTAT TGCTCCAGAA GTCTCATAAA
  CTTGACTCCA GGCCCAGCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46740994	NES10649895	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32878856					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46740994	NES10649895	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185871406 () rs orientation: forward

Symbol	Name	Function Class
Rr425453	regulatory region 425453	1873 bp distal
Rr425454	regulatory region 425454	844 bp distal
Tssr10623	transcription start site region 10623	1238 bp downstream