rs32878464 SNP Detail

Summary

• ID
  rs32878464
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152630880 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGGAGTTGA TGAGGTCCAA
  CCTGGCCTGG AGCCTGCGAT TCCATCACTA GTCCCCCAGC CTGGCCTGGG CTCAGGCAGA
  AGCCTGAGAT TGACAGCTGG AGAGACTTGC TCAAGAGAGG CCCCCCACCC CTGGGCTGTC
  CTGGGGGCCT TCGTGCAGTC TCTGTTCACC TGCCTCACCT GGCACAAGGA CTTCATGCTG
  M
  CTCAGCCCGG GTCCAGAGGT CCCCAGATCC TACACCCACT CTGGCCGCTC CTTTAGCCAC
  ACCGAAACCT GCCATTCTGT CCTCGTGGGC TCTGCTGTGC ACCCTGGCCT GGCTCCCTCC
  TGGGGCTCAT CGTCACTCTG AAAGGCTGCT TAAATCCAGA GAGCCGCTTG GCCAGCCCCT
  GCCTTATTCT GTTACCCGTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46741353	NES10994196	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32878464					SNP	A	A	A	A	A	A	C	A	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46741353	NES10994196	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152630880 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nphp4	nephronophthisis 4 (juvenile) homolog (human)			Intron
				Noncoding-Transcript-Variant
Rr605903	regulatory region 605903			171 bp proximal
Rr605904	regulatory region 605904			257 bp proximal
Rr605905	regulatory region 605905			1364 bp proximal