rs32877871 SNP Detail

Summary

• ID
  rs32877871
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152630713 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATGGCAGG CACCCGACCC
  CTTGTTCTGT TCCCCTGGGC CGGCAGCCTC CCAAGTCTTC ACTCCCGGGG AAGGTGCCCT
  CATGGCTGTA GGAAGAGTCA GGGGTTACAG AAGCTTCGAC CTCAGTCTGG TTCCCTCGTC
  CTGCCGGGTA GGGGGAAGCT CTGGGACACG GAGTTGATGA GGTCCAACCT GGCCTGGAGC
  Y
  TGCGATTCCA TCACTAGTCC CCCAGCCTGG CCTGGGCTCA GGCAGAAGCC TGAGATTGAC
  AGCTGGAGAG ACTTGCTCAA GAGAGGCCCC CCACCCCTGG GCTGTCCTGG GGGCCTTCGT
  GCAGTCTCTG TTCACCTGCC TCACCTGGCA CAAGGACTTC ATGCTGACTC AGCCCGGGTC
  CAGAGGTCCC CAGATCCTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46741350	NES10994194	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs32877871					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46741350	NES10994194	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152630713 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nphp4	nephronophthisis 4 (juvenile) homolog (human)			Intron
				Noncoding-Transcript-Variant
Rr605903	regulatory region 605903			338 bp proximal
Rr605904	regulatory region 605904			424 bp proximal
Rr605905	regulatory region 605905			1531 bp proximal