rs32877868 SNP Detail

Summary

• ID
  rs32877868
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152630590 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCCCAGGC GGCAGAGTGA
  GGGCTTCAGA TGCACAGGGC AGCTGGGCCC AGCAAGGCCC GCTCCTCCTG AGAGGAGCCA
  GATCCTTCCC TCTAGAGACA TTCTCTTTGC AACCAGCCCT CCGTCATGGC AGGCACCCGA
  CCCCTTGTTC TGTTCCCCTG GGCCGGCAGC CTCCCAAGTC TTCACTCCCG GGGAAGGTGC
  Y
  CTCATGGCTG TAGGAAGAGT CAGGGGTTAC AGAAGCTTCG ACCTCAGTCT GGTTCCCTCG
  TCCTGCCGGG TAGGGGGAAG CTCTGGGACA CGGAGTTGAT GAGGTCCAAC CTGGCCTGGA
  GCCTGCGATT CCATCACTAG TCCCCCAGCC TGGCCTGGGC TCAGGCAGAA GCCTGAGATT
  GACAGCTGGA GAGACTTGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	WSB/EiJ
ss46741347	NES10994192	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	WSB/EiJ
rs32877868					SNP	C	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46741347	NES10994192	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152630590 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nphp4	nephronophthisis 4 (juvenile) homolog (human)			Intron
				Noncoding-Transcript-Variant
Rr605903	regulatory region 605903			461 bp proximal
Rr605904	regulatory region 605904			547 bp proximal
Rr605905	regulatory region 605905			1654 bp proximal