rs32874080 SNP Detail

Summary

• ID
  rs32874080
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:70296365 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCACAGCACA GGGATAAGAA GCAGAGCGGT GACTGTCAGA
  TTCGACACTG TCAAGAAGGA CCAAGGGGAT TCCATGACAT GGGGACAGGA ATGTCGAAAT
  Y
  ACTGAAAAAC GTGAAAAATG AGAAATGCAC ACTGCAGGAC CTGGAATATG GCGAGAAAAC
  TGAACATCAC GGAAAATGAG AATAACACTC TTTAGGTAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45706306	mCV24453517	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss146495405	ENSMUSSNP5981047	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs32874080					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:70296365 () rs orientation: forward

Symbol	Name	Function Class
Cdk5rap2	CDK5 regulatory subunit associated protein 2	Intron
Rr593865	regulatory region 593865	476 bp distal
Rr593866	regulatory region 593866	573 bp distal
Tssr37622	transcription start site region 37622	1 bp downstream
Tssr37623	transcription start site region 37623	14 bp upstream
Tssr37624	transcription start site region 37624	47 bp upstream
Tssr37625	transcription start site region 37625	91 bp upstream
Tssr42116	transcription start site region 42116	47 bp downstream
Tssr42117	transcription start site region 42117	79 bp downstream
Tssr42118	transcription start site region 42118	91 bp downstream