rs32872831 SNP Detail

Summary

• ID
  rs32872831
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152575051 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGGTAGCT ATGGCCTCAG
  GGGTCAGAAG ATTAAAGTCT TGGCAAAACT TGTGTCTCGG GAACTGCAGT GCTGATCTGT
  CTGACATGAT GTTATCCAGC GCTTGAAAGG TCTGCCAGAC CAGTGTGTCA GCGACAGTGG
  AGTCCATGTT GTAAATCTCG TCATGATTCT GCGTGACCCC ACGAGACGTG CCACGAGGGC
  Y
  GTCTCAGCTT GGGCAGTGTG TGGCCTGGCG CCTTTGGCAG GGCGGGTAAA GGAGGTTTGC
  CCTCTGTCTC TTGGCGGTGT TACAGCAGGT GGGGGATGGT GCAGCCCCCT GCCGCCCTTG
  GCAGCAGCTC TGGAGGCACG AGTGGGCTGT TTTGATTTTC TCTTTCTCCC ATGTGTAGGG
  GCCCGGGGAA ACCTTGTGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	CAST/EiJ
ss46740330	NES10996974	PERLEGEN	MM_PANEL2	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	CAST/EiJ
rs32872831					SNP	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46740330	NES10996974	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152575051 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nphp4	nephronophthisis 4 (juvenile) homolog (human)			Intron
				Noncoding-Transcript-Variant
Rr605890	regulatory region 605890			728 bp proximal
Rr605891	regulatory region 605891			837 bp proximal