rs32872828 SNP Detail

Summary

• ID
  rs32872828
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152574951 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCTGGCTG CGAACGTGGT
  GCTCTCTGAC CTTGGCCATC ACCCAGCTGT ATGGTTTTGT GCACCTTGGC GTGGCTCATC
  CTGAGGCTGC CCAGAATAAC ACTGGTAGCT ATGGCCTCAG GGGTCAGAAG ATTAAAGTCT
  TGGCAAAACT TGTGTCTCGG GAACTGCAGT GCTGATCTGT CTGACATGAT GTTATCCAGC
  R
  CTTGAAAGGT CTGCCAGACC AGTGTGTCAG CGACAGTGGA GTCCATGTTG TAAATCTCGT
  CATGATTCTG CGTGACCCCA CGAGACGTGC CACGAGGGCC GTCTCAGCTT GGGCAGTGTG
  TGGCCTGGCG CCTTTGGCAG GGCGGGTAAA GGAGGTTTGC CCTCTGTCTC TTGGCGGTGT
  TACAGCAGGT GGGGGATGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	PWD/PhJ	WSB/EiJ
ss46740327	NES10996973	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	G	G	G	G	G	G	G
ss148082849	ENSMUSSNP6547554	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	PWD/PhJ	WSB/EiJ
rs32872828					SNP	A	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46740327	NES10996973	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152574951 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nphp4	nephronophthisis 4 (juvenile) homolog (human)			Intron
				Noncoding-Transcript-Variant
Rr605890	regulatory region 605890			828 bp proximal
Rr605891	regulatory region 605891			937 bp proximal