rs32871858 SNP Detail

Summary

• ID
  rs32871858
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152548334 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGGAGGAA GCCAGCCTGG
  TGCTCTAGAC AGAAAGTTCA TACCATCATC TGCTTCTTGG GACGATGTGC CTTGTCACCT
  GTGCTGGCAT CGCCTCCTTA TGGTGGCCAG GCCTGCCCTA ACCCAGGATG CTGAACTTCT
  GGAACCAGGA GAGGTTGTGC CTCCCTAACC TGCCAGCTGG AGCAGGAAGA TGAAATCCTA
  Y
  GATAACCCTA CTCTTAGTCA CAGGGTGGGC ACTTGGCCCT GGCATGGGCC CAAAGGCTGC
  TGTTTTTTGA GACAAGATCA TGCATGCACA ATGACACCCG ACTCCCAAAT CCCACCACCT
  CATCACTGTT GAGCCTGCAA CCCCTGACAT ACAATCCCTG ATGGATGGAA AGAAGTCACT
  AGACTAGGAA ACAGGTCATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss45718736	mCV23464870	ABI	CRAMUS_MOUSE	f	SNP		C	T					T		T
ss46740000	NES10998098	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	T		C		T	T		C	T	C		C
ss321434800	CHEV_4_151837986	CHEVERUD	SCREENING_POP	f	SNP													C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs32871858					SNP	C	C	T	T	T	T	T	T	C	T	T	T	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46740000	NES10998098	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152548334 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Kcnab2	potassium voltage-gated channel, shaker-related subfamily, beta member 2			Intron
				Noncoding-Transcript-Variant
Rr605885	regulatory region 605885			414 bp distal
Rr605886	regulatory region 605886			1187 bp proximal