rs32869582 SNP Detail

Summary

• ID
  rs32869582
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152574610 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGTGTCCT GCAGGCCTTC
  TCAGTGACGC TGGGCTCTTT AAGAGTTGAA GAGGCCACAG AGGCCTTCCC CATGCTGCCT
  GCTGTTTCAT GTGACCTTCA GGGGACAGCG AGGAGGACTC TGCCCAGGTT TGACTCTGCA
  GGTGACAGTC ACTGATGACT CTGAGCCGTT TCTTCTCTAG CAGGTGAAGT GACTGAGGAC
  R
  AGGAACCCTG GTTTTGTGAC ATTCGGTACC GTGGTTGACA GTGGAGGTGA CCATGGTGCT
  TTTGAGTTGC TGTTCTGGTC GCTTAGGCGC CAGGGCTCCT TTCTGCCACG GCTGCTTCCG
  TCGTCGCCAG GATGAGCCTC AGTCTGGCTG CGAACGTGGT GCTCTCTGAC CTTGGCCATC
  ACCCAGCTGT ATGGTTTTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	PWD/PhJ
ss46740312	NES10996968	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	PWD/PhJ
rs32869582					SNP	G	A	A	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46740312	NES10996968	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152574610 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nphp4	nephronophthisis 4 (juvenile) homolog (human)			Intron
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Rr605890	regulatory region 605890			1169 bp proximal
Rr605891	regulatory region 605891			1278 bp proximal
Tssr40559	transcription start site region 40559			1821 bp downstream