rs32869579 SNP Detail

Summary

• ID
  rs32869579
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152574578 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCTGTGGT GGTGGTGGTG
  AGCTGGGTGG CAGCTGTGTC CTGCAGGCCT TCTCAGTGAC GCTGGGCTCT TTAAGAGTTG
  AAGAGGCCAC AGAGGCCTTC CCCATGCTGC CTGCTGTTTC ATGTGACCTT CAGGGGACAG
  CGAGGAGGAC TCTGCCCAGG TTTGACTCTG CAGGTGACAG TCACTGATGA CTCTGAGCCG
  Y
  TTCTTCTCTA GCAGGTGAAG TGACTGAGGA CAAGGAACCC TGGTTTTGTG ACATTCGGTA
  CCGTGGTTGA CAGTGGAGGT GACCATGGTG CTTTTGAGTT GCTGTTCTGG TCGCTTAGGC
  GCCAGGGCTC CTTTCTGCCA CGGCTGCTTC CGTCGTCGCC AGGATGAGCC TCAGTCTGGC
  TGCGAACGTG GTGCTCTCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	WSB/EiJ
ss46740309	NES10996966	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	WSB/EiJ
rs32869579					SNP	T	T	T	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46740309	NES10996966	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152574578 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nphp4	nephronophthisis 4 (juvenile) homolog (human)			Intron
				Noncoding-Transcript-Variant
Rr605890	regulatory region 605890			1201 bp proximal
Rr605891	regulatory region 605891			1310 bp proximal
Tssr40559	transcription start site region 40559			1789 bp downstream