rs32869549 SNP Detail

Summary

• ID
  rs32869549
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152547247 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAGAGCAG CGCCCCCGAG
  CCGGCTGTGG TGTAACTAGC CTGCCATGTC AGAGATGGAA AGTCTAGATC TAGTGGATGG
  TCACTGTGCC AGGTCGAGGT GGGGTGGATG AGGGGCAGGT GAATCGCTCT CCCACAGAGG
  GGCAGAGAGA GCAGCAGAGC GAGGCGCACG GCCAAAGTCT GCAGAGACTG GAAGCTTCTG
  Y
  AGCTCCTTGC TGGAACATCT ATCATAAAGG GATAGAGAAA ACGCTGAGTC TCCTCTCATG
  GCTGGATGGA GATTTTTAAG TGAGCCAAAG CAGAAGCCCG GTGGAAGTGG GGGTGGGGGT
  GGAAACAGAA TCTGTCCCTA GGAGACTGTT CCAGTGCCTG ACTCAGCAAG GCGCGTGCTG
  GGGTGGGGGG CTCTCTGAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss46739970	NES10998088	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs32869549					SNP	C	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46739970	NES10998088	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152547247 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Kcnab2	potassium voltage-gated channel, shaker-related subfamily, beta member 2			Intron
				Noncoding-Transcript-Variant
Rr605885	regulatory region 605885			451 bp proximal