rs32866317 SNP Detail

Summary

• ID
  rs32866317
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152545890 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGGCCTTT ATTCCCAGTA
  CTTTGGAGAC AGAGGTAGAA AGAGCTCTGT GGGTTCAAGT CCAGCCTGGT CTACATCGTG
  AATTCTAGGT CAGCCAGGGC TACACCTTTC TCAAAACAAA TACACAAACA ATGAAAGTGA
  CCTTGAATAA AGGGACTCTG AAAACCAAGA AGTGGGACCC AGGATTCAAA CTCACATTGC
  R
  AGTTACCAGA TCAAGACACC TAAGTGTGAG GGACACTTTC CAGGGCCAGG GAATTTTCCC
  TGGTGACCAC AGGCCTCATG GCCTCATTCC CAGAATTCTC AGGGGAAAGC ATGCACCCGG
  CAGAGTGGAA CCCCAGGGCA CAAAGTGAAT TCCAGGACAT CTTGCTGTAC TTCTTTCTTT
  CAAACTAAAT TTATAACCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46739925	NES10998073	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G	G	G	G	G	A		G	G	A	G
ss148082681	ENSMUSSNP708641	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32866317					SNP	G	G	G	G	G	G	G	G	G	G	G	A	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46739925	NES10998073	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152545890 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Kcnab2	potassium voltage-gated channel, shaker-related subfamily, beta member 2			Intron
				Noncoding-Transcript-Variant
Rr605885	regulatory region 605885			1808 bp proximal