rs32862918 SNP Detail

Summary

• ID
  rs32862918
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152516067 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGGATGAC AAGAAAGTGT
  GGGTGGAACA CTTGTCTCAG AAGACATGCC AGTGCCTGTG GGGTCTTGGG TACAGGCTGA
  CCCACCTCTC AAACAAAAGA ACAAATAGCA ATTGCCAACT TGTGGGACAG GCAGTCAGTA
  CCCTGAACAC AACCCAAGGT ACGTGAGCAC TTGGAGAGGC CCCAGGACTG AGCTGGCATG
  Y
  TCCCCCAAAA GGACAAACCT GTTGTGATGG TGTCTCCAAG GGGTTTTTTC TTAGAAGAGA
  TGACGTGTGG TGGGTTTTGA GAGGTGAAGC CTTAGAATAA GTCTTTAGCC TATTGTGGAC
  CAAGATGTAA GCTCTCAGCG ATCCCGCCTT TGCTCTGCCC TAGCTATGGA CTCTAATTGT
  CTGAAGCTCA AATTTAACAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46739382	NES10999834	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32862918					SNP	C	C	T	C	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46739382	NES10999834	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152516067 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
D4Mit356	DNA Segment, Chr 4, Massachusetts Institute of Technology 356			1518 bp distal
Kcnab2	potassium voltage-gated channel, shaker-related subfamily, beta member 2			Intron
				Noncoding-Transcript-Variant
Rr605873	regulatory region 605873			776 bp proximal
Rr605874	regulatory region 605874			858 bp proximal
Rr605875	regulatory region 605875			905 bp proximal