rs32862102 SNP Detail

Summary

• ID
  rs32862102
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152515718 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACGGCTTG TCCACCCCAT
  TCCACGCTGT GTCTGCAGTG GACAGCGAGG GCACCTGTGG CATGTGGCCA CTGCCACAGT
  GGAGAGGCAC ACAGAGATGT CCTTCCCCTC CATGCGGGTG CACACTATGT GGCTATATGT
  ACAGATCGCA GCTGCCTATG CACGGAAGGT TCTAGAAATC TGTTTGGGCA CACAATGCAC
  Y
  TGCCTCTGGT AGGCTTCCTT CACAGCACAC CCTTGACCGA ACTTCAGATA AAGCCTTTAG
  GTTGTTCACT GTGAGGCCCA GCATCAGGCT AAGGCAAAAT GCTGAGGGTC CAGGGTTGTG
  ACCGACCCCT GGGGAAACAA ATGTTACCTT TGGATGACAA GAAAGTGTGG GTGGAACACT
  TGTCTCAGAA GACATGCCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46739376	NES10999832	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T		C	T	C	C		C
ss321434653	CHEV_4_151805370	CHEVERUD	SCREENING_POP	f	SNP										C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32862102					SNP	T	T	T	T	T	C	T	T	T	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46739376	NES10999832	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152515718 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
D4Mit356	DNA Segment, Chr 4, Massachusetts Institute of Technology 356			1169 bp distal
Kcnab2	potassium voltage-gated channel, shaker-related subfamily, beta member 2			Intron
				Noncoding-Transcript-Variant
Rr605873	regulatory region 605873			1125 bp proximal
Rr605874	regulatory region 605874			1207 bp proximal
Rr605875	regulatory region 605875			1254 bp proximal