rs32862099 SNP Detail

Summary

• ID
  rs32862099
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152515680 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGGCTGTT CTTTATTTGA
  ATGCCAGGCA CACGGCTCAC ACGGCTTGTC CACCCCATTC CACGCTGTGT CTGCAGTGGA
  CAGCGAGGGC ACCTGTGGCA TGTGGCCACT GCCACAGTGG AGAGGCACAC AGAGATGTCC
  TTCCCCTCCA TGCGGGTGCA CACTATGTGG CTATATGTAC AGATCGCAGC TGCCTATGCA
  Y
  GGAAGGTTCT AGAAATCTGT TTGGGCACAC AATGCACTTG CCTCTGGTAG GCTTCCTTCA
  CAGCACACCC TTGACCGAAC TTCAGATAAA GCCTTTAGGT TGTTCACTGT GAGGCCCAGC
  ATCAGGCTAA GGCAAAATGC TGAGGGTCCA GGGTTGTGAC CGACCCCTGG GGAAACAAAT
  GTTACCTTTG GATGACAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46739373	NES10999831	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C		C	C	T	C		C
ss321434652	CHEV_4_151805332	CHEVERUD	SCREENING_POP	f	SNP											T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32862099					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46739373	NES10999831	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152515680 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
D4Mit356	DNA Segment, Chr 4, Massachusetts Institute of Technology 356			1131 bp distal
Kcnab2	potassium voltage-gated channel, shaker-related subfamily, beta member 2			Intron
				Noncoding-Transcript-Variant
Rr605873	regulatory region 605873			1163 bp proximal
Rr605874	regulatory region 605874			1245 bp proximal
Rr605875	regulatory region 605875			1292 bp proximal