rs32861705 SNP Detail

Summary

• ID
  rs32861705
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152517845 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACGCCAGG GGAAGCTCAC
  TGCAGGCTTA GGTACACCTG CGCTTTACCG GGTACCTTTT CAGCCTGCTG CTCTGTCCTT
  CCTTGCCCAC AGGCTCTCTT GAGGATGGGG TTCAAGTGCG AGTTTGGTTT TATTACTCAG
  TTTCGACCAG AAAAAAAAAA CAGTATGCAT TCCTCATATG CCACACAGAT GGACACACGC
  R
  TGTTTGCAAG CTCCAGCTCA GGTAGAAGTT TGTATCCCAT CAACACTGCG GTCAAGCCAG
  AGCCTCACCT CTCAGACTCC CCTGTGAGGA ACGAGGCCTC AGAGACAGTG GCAAAAGTCA
  GCCTGCGAAC CCAGGCGCGG CCATGATCTT GAGGCCACGA GAAGAACACA GCTCTGCAAA
  GGTCCAGTGC TGACCCCGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46739433	NES10999676	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G		G	G	A	G		G
ss321434664	CHEV_4_151807497	CHEVERUD	SCREENING_POP	f	SNP										A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32861705					SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46739433	NES10999676	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152517845 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Kcnab2	potassium voltage-gated channel, shaker-related subfamily, beta member 2			Intron
				Noncoding-Transcript-Variant
Rr605873	regulatory region 605873			779 bp distal
Rr605874	regulatory region 605874			899 bp distal
Rr605875	regulatory region 605875			852 bp distal
Rr605876	regulatory region 605876			1373 bp proximal
Rr605877	regulatory region 605877			1632 bp proximal