rs32861019 SNP Detail

Summary

• ID
  rs32861019
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152517804 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAGATGGG CTGTCTGTGG
  TCGGCTGGTC CGAGGGTCAG CTAACGCCAG GGGAAGCTCA CTGCAGGCTT AGGTACACCT
  GCGCTTTACC GGGTACCTTT TCAGCCTGCT GCTCTGTCCT TCCTTGCCCA CAGGCTCTCT
  TGAGGATGGG GTTCAAGTGC GAGTTTGGTT TTATTACTCA GTTTCGACCA GAAAAAAAAA
  M
  CAGTATGCAT TCCTCATATG CCACACAGAT GGACACACGC GTGTTTGCAA GCTCCAGCTC
  AGGTAGAAGT TTGTATCCCA TCAACACTGC GGTCAAGCCA GAGCCTCACC TCTCAGACTC
  CCCTGTGAGG AACGAGGCCT CAGAGACAGT GGCAAAAGTC AGCCTGCGAA CCCAGGCGCG
  GCCATGATCT TGAGGCCACG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss46739427	NES10999674	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A		A	A	C		A
ss321434663	CHEV_4_151807456	CHEVERUD	SCREENING_POP	f	SNP											C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs32861019					SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46739427	NES10999674	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152517804 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Kcnab2	potassium voltage-gated channel, shaker-related subfamily, beta member 2			Intron
				Noncoding-Transcript-Variant
Rr605873	regulatory region 605873			738 bp distal
Rr605874	regulatory region 605874			858 bp distal
Rr605875	regulatory region 605875			811 bp distal
Rr605876	regulatory region 605876			1414 bp proximal
Rr605877	regulatory region 605877			1673 bp proximal