rs32861016 SNP Detail

Summary

• ID
  rs32861016
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152517726 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGCTTTGT GAAACTTCTA
  CTGGAGATCC AAAGTGCATG ATGGACCCAC GGTCTCTTTG TCCGAGGGCC AAGGACAGGA
  CAGATGGGCT GTCTGTGGTC GGCTGGTCCG AGGGTCAGCT AACGCCAGGG GAAGCTCACT
  GCAGGCTTAG GTACACCTGC GCTTTACCGG GTACCTTTTC AGCCTGCTGC TCTGTCCTTC
  Y
  TTGCCCACAG GCTCTCTTGA GGATGGGGTT CAAGTGCGAG TTTGGTTTTA TTACTCAGTT
  TCGACCAGAA AAAAAAAACA GTATGCATTC CTCATATGCC ACACAGATGG ACACACGCGT
  GTTTGCAAGC TCCAGCTCAG GTAGAAGTTT GTATCCCATC AACACTGCGG TCAAGCCAGA
  GCCTCACCTC TCAGACTCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46739424	NES10999673	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32861016					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46739424	NES10999673	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152517726 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Kcnab2	potassium voltage-gated channel, shaker-related subfamily, beta member 2			Intron
				Noncoding-Transcript-Variant
Rr605873	regulatory region 605873			660 bp distal
Rr605874	regulatory region 605874			780 bp distal
Rr605875	regulatory region 605875			733 bp distal
Rr605876	regulatory region 605876			1492 bp proximal
Rr605877	regulatory region 605877			1751 bp proximal