rs32857548 SNP Detail

Summary

• ID
  rs32857548
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:86989534 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCATCTGCA AGGTAGTTTC
  TAGCTGTGAT AGACAGGGTA GGATAGCTGA GTCTGAGACT CGGGATACTG CTTAACTCTT
  ATCAGAATCC ACCAGCAGGC AGGTCTCACC ATTTGGATGT ATATGCTAGA TTCAAAGTGC
  TTAGAGACTT GGATATAGTA ATACAAGGAC TTAGGAGTCT GGCAGAGGGC AGGTGACCCT
  Y
  TCTTTTCCAC GGGACTTGTG TATAGTGGGG GAAACCCCTA CAGCTTTTCT TTCCAAATGA
  GGTTTTATTG CTTTTGAAAA ATAGCCCCAG GAAAAGTTAG CCTCTGTTCC CCCCAACTCT
  CCAAGGCTCA AGAGTTAACA CCAAGAAGTG GGACAGATAC CGGAGAGAAG CTTGTGTGGC
  TCCCACTAGT GGTGGATCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46738316	NES10744929	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32857548					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46738316	NES10744929	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:86989534 () rs orientation: forward

Symbol	Name	Function Class
Kirrel1	kirre like nephrin family adhesion molecule 1	mRNA-UTR
Rr579434	regulatory region 579434	91 bp proximal
Rr579435	regulatory region 579435	176 bp proximal