rs32856683 SNP Detail

Summary

• ID
  rs32856683
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:86989399 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACAGGGA CATCATCACA
  AACCTGACAC TCAAGGCACT GAAAATGGAA GAAGGAATCT GATTGGTCAG GGGTGGGGTG
  GGGGGCAGTG AGGAGGAGAC AAAACCAAAA TTTGTCTGGA TAAAGTATCT ACCACGCCAT
  CTGCAAGGTA GTTTCTAGCT GTGATAGACA GGGTAGGATA GCTGAGTCTG AGACTCGGGA
  Y
  ACTGCTTAAC TCTTATCAGA ATCCACCAGC AGGCAGGTCT CACCATTTGG ATGTATATGC
  TAGATTCAAA GTGCTTAGAG ACTTGGATAT AGTAATACAA GGACTTAGGA GTCTGGCAGA
  GGGCAGGTGA CCCTCTCTTT TCCACGGGAC TTGTGTATAG TGGGGGAAAC CCCTACAGCT
  TTTCTTTCCA AATGAGGTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss45486150	mCV24905795	ABI	CRAMUS_MOUSE	f	SNP	C	C	T					T		T
ss46738310	NES10744927	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	T		C	T	T	T	C	T	T	C
ss135453694	ENSMUSSNP6815748	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs32856683					SNP	C	C	T	T	T	T	T	T	C	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46738310	NES10744927	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:86989399 () rs orientation: forward

Symbol	Name	Function Class
Kirrel1	kirre like nephrin family adhesion molecule 1	mRNA-UTR
Rr579434	regulatory region 579434	226 bp proximal
Rr579435	regulatory region 579435	311 bp proximal