rs32856437 SNP Detail

Summary

• ID
  rs32856437
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:138818950 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAGG AAACGCCCCG GCCTTGTCTC
  Y
  TCTTTGGCTC TAAGTCAAGG CAAAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45703549	mCV24615955	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss147665148	ENSMUSSNP6828393	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
ss321379342	CHEV_4_138647554	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs32856437					SNP	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138818950 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15160	CpG island 15160			290 bp proximal
Nbl1	NBL1, DAN family BMP antagonist			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr603103	regulatory region 603103			1975 bp distal
Rr603104	regulatory region 603104			within coordinates
Rr603105	regulatory region 603105			1344 bp proximal
Tssr44201	transcription start site region 44201			1112 bp downstream
Tssr44202	transcription start site region 44202			1319 bp downstream
Tssr44203	transcription start site region 44203			1354 bp downstream
Tssr44204	transcription start site region 44204			1371 bp downstream
Tssr44205	transcription start site region 44205			1407 bp downstream