rs32855887 SNP Detail

Summary

• ID
  rs32855887
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:87022500 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTTGGCTA ATGGCCTCCA
  TGCATTCCTC AATGACAGAA GTGGGCCCTG GAAGCCCGGA GAGGGCCGAG AGGGAGGGAA
  GGACAGCGAG AAAGTTCAGA ACAATAAGGA AGGATTCTTG ATAATTCCTC AGCTATGGTG
  TCATCTATAA AAGGACTGGA ACACAAGCGA CCCAGAGGGA AAACCTGGTA AGAAACTGTC
  Y
  TTCTGGGAAG TGAAAGGACT GATAGGGTTG AGGGCAGGGG AGAAGTATCC ATCCCTCAGG
  CACTACAAAA CCTGAAAGCA GCAAGCAGCA CAAAGTGCAA ACAAGCCCCG AGCCCTTAGG
  CCTGACTCTA CTACAAGGCA CCACTGTCCA GACACAGGTG CCACAAGTGT GGCTAAAGTT
  CAGCACTCCA TGAAGAACGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46738568	NES10743805	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs32855887					SNP	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46738568	NES10743805	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87022500 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Kirrel1	kirre like nephrin family adhesion molecule 1			Intron
				mRNA-UTR
Rr579439	regulatory region 579439			10 bp distal