rs32855562 SNP Detail

Summary

• ID
  rs32855562
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152449316 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGAAGGCT GTATCAGCAT
  GCACAGACCC CCCAATCTTA AAATAATAAT AATAATAATA ATAATAATAA TTTCAGCAAG
  ACTGAGTCAC CTGCCTGAAG TCACACAGCC GAGGCTACAG GACTGGGAAC TAGACCCAGT
  GTCTTTTGGT AGCACTAGTG TTTTCTTGCC CAGAGTCCCC AGTCCGTGTG TCACCTCATC
  Y
  CTGAAGTCTG GCATTCCCAG GTACTTAGAC CGGCCAGGGC AAGGAGGCCC AGCAGGAGGG
  CATCGGCAGG AGGAGCTCAC TCCCAAGCCT TGGGCAGGGC AAGCCTCTGC TGATTTCTGG
  GTGCAGGTGC TGGACGGCAG GTGGCTGCTG CCAGCCGGCC TTGGGGAAGG CCATGAGTAC
  CTGTCACGGG GGGCAGCTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss46738392	NES11002094	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs32855562					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46738392	NES11002094	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152449316 () rs orientation: forward

Symbol	Name	Function Class
Chd5	chromodomain helicase DNA binding protein 5	Intron
Rr605861	regulatory region 605861	421 bp proximal