rs32855088 SNP Detail

Summary

• ID
  rs32855088
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:87020603 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGTAGGCAA ACAGAGGCAA GTTAGAACAG ACAGAAATCT
  GTCAGTTGCA GTTGACTTGG CAGAACCTGA CATCTTCTGC CTCTGACTGC TTTCCAGCCC
  Y
  GTGGTATACA AGGAGCCAGC AGGAAGGCTG TGGTGGAGAT GGAGCCATAC AGAGCTGCTC
  CAGAGCCCTT TCCCATCGTC CTGCCCTTCT CTGGAGCAGG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46738559	NES10743929	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32855088					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46738559	NES10743929	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87020603 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm19382	predicted gene, 19382			1076 bp upstream
Kirrel1	kirre like nephrin family adhesion molecule 1			Intron
				mRNA-UTR
Rr579439	regulatory region 579439			1505 bp proximal
Tssr33924	transcription start site region 33924			1022 bp upstream
Tssr33925	transcription start site region 33925			851 bp upstream
Tssr33926	transcription start site region 33926			827 bp upstream