rs32854745 SNP Detail

Summary

• ID
  rs32854745
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152447788 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCCTGGGG TTCCCCCAGG
  CATGGTTGGG AGCTGGGACT AGCAGCTGTG AAGGAGGCTT GTTCCACCTA GGAGAGGGCT
  TGGGGGCTGA AGGGCTGGTC CGGGAACTGG GGTGAGCGGC CGGTCTCCCG TGCTCTGTGA
  CTAGTTGGAG CTGTACCACA CCGTGATGTA TCGCAACTAC CAAAGAAAGA ATGACATGGA
  Y
  GAACCGCCAC CCTTTGATTA CGGCTCTGGC GATGAGGATG GTAAGAGCGA GAAACGGAAG
  AACAAGGACC CTCTCTACGC CAAGATGGAG GAACGCTTCT ACCGCTACGG CATCAAGCCC
  GAGTGGATGA TGGTTCACCG CATCCTGAAC CACAGGTGAG GGTGTTGGGT AGCACCTGCC
  GGGTGAGGGC TGTCCAGGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46738374	NES11002188	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32854745					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46738374	NES11002188	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152447788 () rs orientation: forward

Symbol	Name	Function Class
Chd5	chromodomain helicase DNA binding protein 5	Coding-Synonymous
Rr605861	regulatory region 605861	1949 bp proximal