rs32852122 SNP Detail

Summary

• ID
  rs32852122
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152412193 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGACTGCAC TCACCCTGTA
  GAAGATGGAA TCATGGATGC TGCCAATTTT GTAAGTGACA TTCTGCTGGG CCTGTGCAGT
  GGGGGGGGAG GGGGGTCCTG TCCCGCGTTC GTGGCTTGTT GGGCAGTCCC CACTTTTTCA
  TTTAACCAGA GCCAGGGCAG ATTAAGTATT TGTTGCTGCA TCTCTTGAGA TAGAAGTATA
  R
  TGGCAGGCTG TGACATACAG GTGACAGAGC TAGCTGTTCT GTCTTGATGA CCTTAACCCT
  GAATCAGGCG ACCACCACGG GTCTGTATGG GCCCACTCTC TGTCTGGGCG GCCTCGTCGT
  GGTCACGGGC CTCCGAATCC TCAGGTAGAT GGCAGCAGCT CGCCAGCACG GATGCCTGAG
  TTGGGCTTCA GTCTGCTTAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46738245	NES11003779	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32852122					SNP	A	A	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46738245	NES11003779	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152412193 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15411	CpG island 15411			1145 bp distal
Rpl22	ribosomal protein L22			Intron
				Noncoding-Transcript-Variant
Rr398901	regulatory region 398901			1890 bp downstream
Rr605841	regulatory region 605841			1857 bp distal
Rr605842	regulatory region 605842			1031 bp distal
Rr605843	regulatory region 605843			1431 bp distal
Rr605844	regulatory region 605844			1020 bp proximal
Rr605845	regulatory region 605845			1134 bp proximal
Tssr40547	transcription start site region 40547			1860 bp downstream