rs32852119 SNP Detail

Summary

• ID
  rs32852119
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152410056 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATTCTTGA GGCGTCCTCC
  TGACTCTGCC TCCTGAGAGG TGGGATTAAA GGCGAGAGCC ACCAGGCCTG GCTGACATCG
  GGGATCCTAA ACTTCTCTGT GATCAAAAAG GGATTGCCCC AGTTCTCCTT AAGATACTTT
  GTTCGATTCT TATCCGGCCA GGTGGTGATT TGTTTAGGGA ACGTCCGTCT TAGTTCTTCA
  W
  GACTTCCAAA AGTAGAGCTG ACCCCTTTAT TTCTCTTTGG GCTCGTCCAG TCTCCCTGAG
  TCATTCGCAG TGGGACAGCC CGTCTGACTC CTCCCTTTCC CGACAGCCGA CTTCGCCCTG
  GGAAAAGCAA TAGCTGGCCG ATCGTTACTT AGGTGGCAGG GAAGGGCGAT CGAGAAGCAA
  GGGCTGATCG ATTGAAGTTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss46738242	NES11003778	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	T	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs32852119					SNP	A	A	A	A	A	A	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46738242	NES11003778	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152410056 () rs orientation: forward

Symbol	Name	Function Class
9430083M05Rik	RIKEN cDNA 9430083M05 gene	874 bp upstream
Rpl22	ribosomal protein L22	Intron
Rr398901	regulatory region 398901	within coordinates
Rr605841	regulatory region 605841	within coordinates
Rr605842	regulatory region 605842	281 bp proximal
Rr605843	regulatory region 605843	685 bp proximal
Tssr40547	transcription start site region 40547	232 bp upstream