rs32852116 SNP Detail

Summary

• ID
  rs32852116
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152410046 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAACCAGGT ACATTCTTGA
  GGCGTCCTCC TGACTCTGCC TCCTGAGAGG TGGGATTAAA GGCGAGAGCC ACCAGGCCTG
  GCTGACATCG GGGATCCTAA ACTTCTCTGT GATCAAAAAG GGATTGCCCC AGTTCTCCTT
  AAGATACTTT GTTCGATTCT TATCCGGCCA GGTGGTGATT TGTTTAGGGA ACGTCCGTCT
  Y
  AGTTCTTCAA GACTTCCAAA AGTAGAGCTG ACCCCTTTAT TTCTCTTTGG GCTCGTCCAG
  TCTCCCTGAG TCATTCGCAG TGGGACAGCC CGTCTGACTC CTCCCTTTCC CGACAGCCGA
  CTTCGCCCTG GGAAAAGCAA TAGCTGGCCG ATCGTTACTT AGGTGGCAGG GAAGGGCGAT
  CGAGAAGCAA GGGCTGATCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss46738239	NES11003777	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs32852116					SNP	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46738239	NES11003777	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152410046 () rs orientation: forward

Symbol	Name	Function Class
9430083M05Rik	RIKEN cDNA 9430083M05 gene	864 bp upstream
Cpgi15411	CpG island 15411	within coordinates
Rpl22	ribosomal protein L22	Intron
Rr398901	regulatory region 398901	within coordinates
Rr605841	regulatory region 605841	within coordinates
Rr605842	regulatory region 605842	291 bp proximal
Rr605843	regulatory region 605843	695 bp proximal
Tssr40547	transcription start site region 40547	242 bp upstream