rs32851163 SNP Detail

Summary

• ID
  rs32851163
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152410017 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATACTGTGA TACCAACCCA
  GGCTGGTCTC AAACCAGGTA CATTCTTGAG GCGTCCTCCT GACTCTGCCT CCTGAGAGGT
  GGGATTAAAG GCGAGAGCCA CCAGGCCTGG CTGACATCGG GGATCCTAAA CTTCTCTGTG
  ATCAAAAAGG GATTGCCCCA GTTCTCCTTA AGATACTTTG TTCGATTCTT ATCCGGCCAG
  S
  TGGTGATTTG TTTAGGGAAC GTCCGTCTTA GTTCTTCAAG ACTTCCAAAA GTAGAGCTGA
  CCCCTTTATT TCTCTTTGGG CTCGTCCAGT CTCCCTGAGT CATTCGCAGT GGGACAGCCC
  GTCTGACTCC TCCCTTTCCC GACAGCCGAC TTCGCCCTGG GAAAAGCAAT AGCTGGCCGA
  TCGTTACTTA GGTGGCAGGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
ss46738236	NES11003776	PERLEGEN	MM_PANEL2	f	SNP	C		G	G	G	G	G	G	G	G		C	G	C
ss148080835	ENSMUSSNP6463338	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G					G
ss321434195	CHEV_4_151699669	CHEVERUD	SCREENING_POP	f	SNP											C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
rs32851163					SNP	C	C	G	G	G	G	G	G	G	G	C	C	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46738236	NES11003776	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152410017 () rs orientation: forward

Symbol	Name	Function Class
9430083M05Rik	RIKEN cDNA 9430083M05 gene	835 bp upstream
Cpgi15411	CpG island 15411	within coordinates
Rpl22	ribosomal protein L22	Intron
Rr398901	regulatory region 398901	within coordinates
Rr605841	regulatory region 605841	within coordinates
Rr605842	regulatory region 605842	320 bp proximal
Rr605843	regulatory region 605843	724 bp proximal
Tssr40547	transcription start site region 40547	271 bp upstream