rs32851160 SNP Detail

Summary

• ID
  rs32851160
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152409660 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACGAGGCTG ATGAGCATCA
  TTAAGGCGCC AAACGCTGCT GAACCGGACC CTGCACTCAC CAGATCTGGG TGGTCCATAA
  AGCTGGCTGA GGCTTTTTGG AACTGGGGAG CTAGCAGGCT CCAGCTTGAA CTTAAGGTCT
  CAAGCTGGAG CGTGCTCCTG GGGGCAGAAG GAAGGCTAGT CACATGGTTG GCAAGATCTT
  Y
  CATGCTGGGC GTTTTCCATA GGATGAAGAA ATATGGTATT ATAACTCACT ATAACTCACC
  ACCACCACCA CCACCTTTTT TTTTTTTTTT TTTTTTTTTT TTTTGGAGGG GGATAGCAAT
  GAACCTTGGC TGGCCTGGAT GGAACTCGCT GTTGTAGATA CTGTGATACC AACCCAGGCT
  GGTCTCAAAC CAGGTACATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss46738233	NES11003821	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C	C	C	C		C	C	C		C
ss321434194	CHEV_4_151699312	CHEVERUD	SCREENING_POP	f	SNP									T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs32851160					SNP	T	C	C	C	C	C	C	C	T	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46738233	NES11003821	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152409660 () rs orientation: forward

Symbol	Name	Function Class
9430083M05Rik	RIKEN cDNA 9430083M05 gene	478 bp upstream
Cpgi15411	CpG island 15411	350 bp proximal
Rpl22	ribosomal protein L22	Intron
Rr398901	regulatory region 398901	342 bp upstream
Rr605841	regulatory region 605841	160 bp proximal
Rr605842	regulatory region 605842	677 bp proximal
Rr605843	regulatory region 605843	1081 bp proximal
Tssr40547	transcription start site region 40547	628 bp upstream