rs32847921 SNP Detail

Summary

• ID
  rs32847921
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:117773948 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGGGAAGGA GAAGGACTCA CTTGGCTGCT AGAGGAAGTC
  CATCCATCAC AATGAGTCAG CAAATCGTTG TCCAAAAGGA AAAAAAGAAA ATGTTTTAAG
  Y
  GTTTTAAAGA AGCCAATTGG ATCCCTGTGA GTTTGAGGCC AGCCTGGTCT ACAGAGTGAA
  GTCCAGGACA GCCAGGGCTA CACAGAGAAA CCCTGTCTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss45702350	mCV25045923	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss147295315	ENSMUSSNP3029049	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs32847921					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117773948 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14674	CpG island 14674	1238 bp distal
Ipo13	importin 13	1752 bp upstream
Rr398419	regulatory region 398419	1337 bp downstream
Rr598257	regulatory region 598257	1763 bp distal
Rr598258	regulatory region 598258	1784 bp distal
Rr598259	regulatory region 598259	1262 bp distal
Rr598260	regulatory region 598260	1622 bp proximal
Tssr43011	transcription start site region 43011	1794 bp upstream
Tssr43012	transcription start site region 43012	1733 bp upstream
Tssr43013	transcription start site region 43013	1697 bp upstream
Tssr43014	transcription start site region 43014	1576 bp upstream
Tssr43015	transcription start site region 43015	1553 bp upstream