rs32846676 SNP Detail

Summary

• ID
  rs32846676
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:101506372 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GATAATATA GTGGAGGGAA TCATGTTGCT
  CCAAAAGATA TGTTTTAAGT TGTAACTCCC TGCTGCCAAA TGAGGGTGTG GCCTTGTTTG
  CAACTAGCAG ATGTTATCAA TCTAAGGTTG CCTTGTGTGA TGTCCTTCAG ATAAGGGGGG
  R
  GGGGGAAAGC ACAAAGTAAG GATTGAAGCA GAgggcccca agatggcttg gtaggaaagg
  cacttgctgt cgagccttaa gacctgcgtt tgatccctgg gacctacctg gttgaaggag
  agaaccaact cgaacaggtt atcctctgac                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45702603	mCV22762455	ABI	CRAMUS_MOUSE	f	SNP	A	G	A
ss147124696	ENSMUSSNP4553658	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A
ss321230717	CHEV_4_101321780	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs32846676					SNP	A	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101506372 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Leprot	leptin receptor overlapping transcript			Intron
				Noncoding-Transcript-Variant
Rr367655	regulatory region 367655			1754 bp downstream
Rr398357	regulatory region 398357			1323 bp downstream
Rr596187	regulatory region 596187			1372 bp distal
Rr596188	regulatory region 596188			1826 bp distal
Rr596189	regulatory region 596189			1457 bp distal
Rr596190	regulatory region 596190			within coordinates
Tssr38009	transcription start site region 38009			1464 bp downstream
Tssr38010	transcription start site region 38010			1439 bp downstream
Tssr38011	transcription start site region 38011			1413 bp downstream
Tssr38012	transcription start site region 38012			1378 bp downstream